SNP Profiles of PA 137 [PER]   View Data

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 Key

 1234567891011121314
_Input profile
TTCCACGTCTGGACCCAGCCGGGGAACC
1._RUQ_1081
__ACGTCT_ACCCAGCC__AA_
2._PA_137_[PER]
__ACGTCT_ACCCAGCC__AA_
3._PA_137_[PER]
__ACGTCT_AC-AGCC__AA_
4._PA_137_[PER]
__ACGTCT_AC_AGCC__AA_
5._PA_137_[PER]
__ACGTCT_AC_AGCC__AA_
6._RUQ_1081
__AC_____AG_GG___
7._GC-05-009-1-09
TTCCACGTCTGGAACCAGCCGGGGAACC
8._GC-05-009-1-09
TTCCACGTCTGGAACCAGCCGGGGAACC
9._GC-05-009-1-09
TTCCACGTCTGGAACCAGCCGGGGAACC
10._GC-05-009-1-09
TTCCACGTCTGGAACCAGCCGGGGAACC
11._GC-05-117-3-19
TTCCACGTCTGGAACCAGCCGGGGAACC
12._GC-05-117-3-19
TTCCACGTCTGGAACCAGCCGGGGAACC
13._GC-05-117-3-19
TTCCACGTCTGGAACCAGCCGGGGAACC
14._GC-05-117-3-19
TTCCACGTCTGGAACCAGCCGGGGAACC
15._GC-05-117-3-19
TTCCACGTCTGGAACCAGCCGGGGAACC
16._GC-05-009-1-09
_CCACGTCTGGAACCAGCCGGGGAACC
17._PA_137_[PER]
__ACGTCT_AACCAGCC__AA_
18._PA_137_[PER]
__ACGTCT_AACCAGCC__AA_
19._PA_137_[PER]
__ACGTCT_AACCAGCC__AA_
20._PA_137_[PER]
__ACGTCT_AACCAGCC__AA_
21._PA_137_[PER]
__ACGTCT_AACCAGCC__AA_
22._PA_137_[PER]
__ACGTCT_AACCAGCC__AA_
23._PA_137_[PER]
__ACGTCT_AACCAGCC__AA_
24._PA_137_[PER]
__ACGTCT_AACCAGCC__AA_
25._PA_137_[PER]
__ACGTCT_AACCAGCC__AA_
26._PA_137_[PER]
__ACGTCT_AACCAGCC__AA_
27._RUQ_36
__ACGTCT_ACCCAGCC__AA_
28._RUQ_1081
__ACGTCT_ACCCAGCC__AA_
29._RUQ_36
-CCACGT--AC-AG---AACC
30._RUQ_36
__ACGTCT_ACCGAG___AA_
31._PA137[PER]
__AC_CTGGACGGAG__GGAACC
32._RUQ_36
AACCACACAGGGACGGAGGGGGGGAAGG
33._MITC-000400
AACCACACAGGGACGGAGGGGGGGAAGG
34._PA_137_[PER]_Fld#_201_Plt#_2
AACCACACAGGGACGGAGGGGGGGAAGG
 1516171819202122232425262728
_Input profile
AGACCTGGCGCCTTTTCCGGGGTTAAGG
1._RUQ_1081
AGACCTGGCGCC_TT_GG___GG
2._PA_137_[PER]
AGACCTGGCGCC_TT_GG___GG
3._PA_137_[PER]
AGACCTGGCGCC_TT_-___GG
4._PA_137_[PER]
AGACCTGGCGCC_TT_GG___GG
5._PA_137_[PER]
AGACCTGGCGCC_TT_GG___GG
6._RUQ_1081
_AC__CGCCTT_CCGGGG_AAGG
7._GC-05-009-1-09
AGACCTGGCGCCTTTTCCGGGGTTAAGG
8._GC-05-009-1-09
AGACCTGGCGCCTTTTCCGGGGTTAAGG
9._GC-05-009-1-09
AGACCTGGCGCCTTTTCCGGGGTTAAGG
10._GC-05-009-1-09
AGACCTGGCGCCTTTTCCGGGGTTAAGG
11._GC-05-117-3-19
AGACCTGGCGCCTTTTCCGGGGTTAAGG
12._GC-05-117-3-19
AGACCTGGCGCCTTTTCCGGGGTTAAGG
13._GC-05-117-3-19
AGACCTGGCGCCTTTTCCGGGGTTAAGG
14._GC-05-117-3-19
AGACCTGGCGCCTTTTCCGGGGTTAAGG
15._GC-05-117-3-19
AGACCTGGCGCCTTTTCCGGGGTTAAGG
16._GC-05-009-1-09
AGACCTGGCGCCTTTTCCGGGGTTAAGG
17._PA_137_[PER]
AGACCTGGCGCC_TT_GG___GG
18._PA_137_[PER]
AGACCTGGCGCC_TT_GG___GG
19._PA_137_[PER]
AGACCTGGCGCC_TT_GG___GG
20._PA_137_[PER]
AGACCTGGCGCC_TT_GG___GG
21._PA_137_[PER]
AGACCTGGCGCC_TT_GG___GG
22._PA_137_[PER]
AGACCTGGCGCC_TT_GG___GG
23._PA_137_[PER]
AGACCTGGCGCC_TT_GG___GG
24._PA_137_[PER]
AGACCTGGCGCC_TT_GG___GG
25._PA_137_[PER]
AGACCTGGCGCC_TT_GG___GG
26._PA_137_[PER]
AGACCTGGCGCC_TT_GG___GG
27._RUQ_36
AGACCTGGCGCC_CT_GG___GG
28._RUQ_1081
AGACCTGGCGCC_CT_GG___GG
29._RUQ_36
AGACCTGGCG----GG----
30._RUQ_36
AGACCTGGCG__TT_GT____
31._PA137[PER]
____CGCCTT______CC
32._RUQ_36
_AC_CCCGCCAAAA_CCGGAAAACC
33._MITC-000400
_AC_CCCGCCAAAA_CCGGAAAACC
34._PA_137_[PER]_Fld#_201_Plt#_2
_AC_CCCGCCAAAA_CCGGAAAACC
 2930313233343536373839404142
_Input profile
CCCCAGTTCCGGGGTTTTCCCCCTCCGG
1._RUQ_1081
_CCAG_CC___TT__CTCCGG
2._PA_137_[PER]
_CCAG_CC___TT__CTCCGG
3._PA_137_[PER]
CCCCAG_CC___TT__CTCCGG
4._PA_137_[PER]
_CCAG_CC___TT__CTCCGG
5._PA_137_[PER]
_CCAG_CC___TT__CTCCGG
6._RUQ_1081
__AGTT____TT___CC_
7._GC-05-009-1-09
CCCCAGTTCCGGGGTTTT_CCCTCCGG
8._GC-05-009-1-09
CCCCAGTTCCGGGGTTTT_CCCTCCGG
9._GC-05-009-1-09
CCCCAGTTCCGGGGTTTT_CCCTCCGG
10._GC-05-009-1-09
CCCCAGTTCCGGGGTTTT_CCCTCCGG
11._GC-05-117-3-19
CCCCAGTTCCGGGGTTTT_CCCTCCGG
12._GC-05-117-3-19
CCCCAGTTCCGGGGTTTT_CCCTCCGG
13._GC-05-117-3-19
CCCCAGTTCCGGGGTTTT_CCCTCCGG
14._GC-05-117-3-19
CCCCAGTTCCGGGGTTTT_CCCTCCGG
15._GC-05-117-3-19
CCCCAGTTCCGGGGTTTT_CCCTCCGG
16._GC-05-009-1-09
CCCCAGTTCCGGGGTTTT_CCCTCCGG
17._PA_137_[PER]
_CCAG_CC___TT__CTCCGG
18._PA_137_[PER]
_CCAG_CC___TT__CTCCGG
19._PA_137_[PER]
_CCAG_CC___TT__CTCCGG
20._PA_137_[PER]
_CCAG_CC___TT__CTCCGG
21._PA_137_[PER]
_CCAG_CC___TT__CTCCGG
22._PA_137_[PER]
_CCAG_CC___TT__CTCCGG
23._PA_137_[PER]
_CCAG_CC___TT__CTCCGG
24._PA_137_[PER]
_CCAG_CC___TT__CTCCGG
25._PA_137_[PER]
_CCAG_CC___TT__CTCCGG
26._PA_137_[PER]
_CCAG_CC___TT__CTCCGG
27._RUQ_36
_CCAG_CC___TT__CTCCGG
28._RUQ_1081
_CCAG_CC___TT__CTCCGG
29._RUQ_36
-CCAGCT-GGGGTT---CT--
30._RUQ_36
_CCAG_____GT__CTCGAG
31._PA137[PER]
GGCC__CC_GGTT__CC_GG_
32._RUQ_36
_GGAG_GGCCGG_AAGGGGAGGGGG
33._MITC-000400
_GGAG_GGCCGG_AAGGGGAGGGGG
34._PA_137_[PER]_Fld#_201_Plt#_2
_GGAG_GGCCGG_AAGGGGAGGGGG

Input profile: PA_137_[PER] RUQ_1081

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._PA_137_[PER] RUQ_1081

identical
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

2._PA_137_[PER]

identical
24 shared markers

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Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row 7 C0181 28
 Dapeng Zhang, 2016

3._PA_137_[PER]

identical
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D274 T1
 Dapeng Zhang, 2014

4._PA_137_[PER]

identical
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D430
 Dapeng Zhang, 2016

5._PA_137_[PER]

identical
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D274 T1
 Dapeng Zhang, 2016

6._PA_137_[PER] RUQ_1081

identical
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

7._PA_137_[PER] GC-05-009-1-09

98.8 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

8._PA_137_[PER] GC-05-009-1-09

98.8 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

9._PA_137_[PER] GC-05-009-1-09

98.8 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

10._PA_137_[PER] GC-05-009-1-09

98.8 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

11._PA_137_[PER] GC-05-117-3-19

98.8 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP3
 Mars, 2018

12._PA_137_[PER] GC-05-117-3-19

98.8 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

13._PA_137_[PER] GC-05-117-3-19

98.8 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

14._PA_137_[PER] GC-05-117-3-19

98.8 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

15._PA_137_[PER] GC-05-117-3-19

98.8 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

16._PA_137_[PER] GC-05-009-1-09

98.8 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

17._PA_137_[PER]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5319 3
 Dapeng Zhang, 2016

18._PA_137_[PER]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5109 2
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

19._PA_137_[PER]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5109 4
 Dapeng Zhang, 2016

20._PA_137_[PER]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5109 5
 Dapeng Zhang, 2016

21._PA_137_[PER]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5109 1 > FP
 Dapeng Zhang, 2016

22._PA_137_[PER]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5109 3 > FP
 Dapeng Zhang, 2016

23._PA_137_[PER]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5319 2
 Dapeng Zhang, 2016

24._PA_137_[PER]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5319 4
 Dapeng Zhang, 2016

25._PA_137_[PER]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5319 5
 Dapeng Zhang, 2016

26._PA_137_[PER]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5319 1 > FP
 Dapeng Zhang, 2016

27._PA_137_[PER] RUQ_36

97.9 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

28._PA_137_[PER] RUQ_1081

97.9 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

29._PA_137_[PER] RUQ_36

97.5 %
20 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

30._PA_137_[PER] RUQ_36

87.5 %
20 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

31._PA_137_[PER] PA137[PER]

80 %
20 shared markers

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Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

32._PA_137_[PER] RUQ_36

44.4 %
36 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

33._PA_137_[PER] MITC-000400

44.4 %
36 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

34._PA_137_[PER] PA_137_[PER]_Fld#_201_Plt#_2

44.4 %
36 shared markers

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USDA-TARS, United States of America
Location: Field: 201, Tree: 2
 Mars, 2018

 

  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484